Extraction of Adverse Drug Effects from Medical Case Reports
Harsha Gurulingappa, Abdul-Mateen Rajput, and Luca Toldo
In Proceedings of the Workshop on Vaccine and Drug Ontology in the Study of Mechanism and Effect (VDOSME), Third International Conference on Biomedical Ontology (ICBO), Graz (Austria), July 2012.

Protein interaction data curation: the International Molecular Exchange (IMEIMEIMEx) consortium
Nature Methods, Vol 9, No.4, p. 345, APRIL 2012

The IntAct molecular interaction database in 2012
Nucleic Acid Research, Vol 40, D841, March 14, 2012

XTractor Premium - a Knowledgebase of manually annotated biomedical relationships updated everyday from PubMed abstracts
Guru Rao, Lokanath Khamari, Vidyendra Sadanandan, Jignesh Bhate- Nature Methods, 2009
Molecular Connections Pvt. Ltd, Basavanagudi, Bangalore, India

Elucidating the role of CREBBP co-activator in erythroid differentiation by literature mining and analysis
Iyer J, Raghunath A, Bhate J, Wang L, 9 (1): 12-20, 2008
Molecular Connections Pvt. Ltd, Basavanagudi, Bangalore, India, and National Institute of Singapore, Singapore.

Plasma proteome knowledgebase: exploring disease biomarker correlations.
Iyer J, Srinivas VM, Khamari L, Sequeira JM, Das N, Periasamy UR, Bhate 8 (1) : 18-29, 2007
Molecular Connections Pvt. Ltd., Bangalore, India

A comparison of information on molecular interactions available in full-length publications versus abstracts.
Mahadevan U, Bhate J, Raghunath A, Kashyap S, Dey PC, Prakash N, Bhat B, Zachariah LL, Wong, L 8 (1) : 8-17, 2007
Molecular Connections Pvt. Ltd., Bangalore, India and National Institute of Singapore, Republic of Singapore

Co-regulator recruitment and the mechanism of retinoic acid receptor synergy
Pierre Germain, Jaya Iyer, Christina Zechel, Hinrich Gronemeyer Nature 415, 187 - 192 (10 Jan 2002), Letters to Nature

Literature Data Mining for Biology
Lynette Hirschman, Jong C. Park, Junichi Tsujii, Cathy Wu, Limsoon Wong.


Toward Routine Automatic Pathway Discovery from On-Line Scientific Text Abstracts
S.-K. Ng, M. Wong.

Natural Language Processing and Information Extraction in Biology
Jun-ichi Tsujii, Limsoon Wong.