Select Publications
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Transforming 50 years of data: A machine learning approach to create new revenue streams for traditional publishers
Biradar, Usha B., Lokanath Khamari, and Shrey Bhate
Information Services & Use 38, no. 1-2 (2018): 61-65.
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LABA/LAMA combinations versus LAMA monotherapy or LABA/ICS in COPD: a systematic review and meta-analysis
Gustavo J Rodrigo; David Price; Antonio Anzueto; Dave Singh; Pablo Altman; Giovanni Bader; Francesco Patalano; Robert Fogel; Konstantinos Kostikas
International Journal of COPD, 2017
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PHI-base: a new interface and further additions for the multi-species pathogen-host interaction database
Martin Urban, Alayne Cuzick, Kim Rutherford, Alistair Irvine, Helder Pedro, Rashmi Pant, Vidyendra Sadanadan, Lokanath Khamari, Santhoshkumar Billal, Kim E. Hammond-Kosack
Nucleic Acids Research, 2017
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Machine Learning Approach for Multi-Layered Detection of Chemical Named Entities in Text
Biradar, Usha B., Harsha Gurulingappa, Lokanath Khamari, and Shashikala Giriyan
International Journal of Software Science and Computational Intelligence (IJSSCI) 8, no. 1 (2016): 1-15
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Recommendation based p2p file sharing on disconnected manet
Teegala Spandana, Sesha Bhrgavi
IJESR, 2015
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The Pathogen-Host Interactions database (PHI-base): additions and future developments
Martin Urban, Rashmi Pant, Arathi Raghunath, Alistair G. Irvine, Helder Pedro and Kim E. Hammond-Kosack
Nucleic Acids Research, 2014
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Challenges in mining the literature for chemical information
Harsha Gurulingappa, Anirban Mudi, Luca Toldo, Martin Hofmann-Apitius and Jignesh Bhate
RSC Advances, 2013
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Automatic detection of adverse events to predict drug label changes using text and data mining techniques.
Harsha Gurulingappa, Luca Toldo, Abdul Mateen Rajput, Jan A. Kors, Adel Taweel, Yorki Tayrouz
Pharmacoepidemiology and Drug Safety, 2013 (DOI: 10.1002/pds.3493)
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‘HypothesisFinder:’ A Strategy for the Detection of Speculative Statements in Scientific Text
Ashutosh Malhotra, Erfan Younesi, Harsha Gurulingappa, Martin Hofmann-Apitius
PLoS Computational Biology, Volume 9, Issue 7, 2013
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Text Analytics for the Detection of Drug Safety Events from Case Reports
Luca Toldo, Sanmitra Bhattacharya and Harsha Gurulingappa
Drug Safety Journal, Volume 35, Issue 1, 2012. pp. 1197-1198
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Extraction of Adverse Drug Effects from Medical Case Reports
Harsha Gurulingappa, Abdul-Mateen Rajput, and Luca Toldo
Journal of Biomedical Semantics, Volume 3, Issue 15, 2012.
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Automated identification of adverse events from case reports using machine learning
Luca Toldo, Sanmitra Bhattacharya and Harsha Gurulingappa
In Proceedings of Workshop on Computational Methods in Pharmacovigilance, 24th European Medical Informatics Conference (MIE), Pisa, Italy, August 2012.
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Protein interaction data curation: the International Molecular Exchange (IMEIMEIMEx) consortium
Nature Methods, Vol 9, No.4, p. 345, APRIL 2012
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The IntAct molecular interaction database in 2012
Nucleic Acid Research, Vol 40, D841, March 14, 2012
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XTractor Premium – a Knowledgebase of manually annotated biomedical relationships updated everyday from PubMed abstracts
Guru Rao, Lokanath Khamari, Vidyendra Sadanandan, Jignesh Bhate – Nature Methods, 2009
Molecular Connections Pvt. Ltd, Basavanagudi, Bangalore, India
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Elucidating the role of CREBBP co-activator in erythroid differentiation by literature mining and analysis
Iyer J, Raghunath A, Bhate J,Wang L, 9 (1): 12-20, 2008
Molecular Connections Pvt. Ltd, Basavanagudi, Bangalore, India, and National Institute of Singapore, Singapore.
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Plasma proteome knowledgebase: exploring disease biomarker correlations.
Iyer J, Srinivas VM, Khamari L, Sequeira JM, Das N, Periasamy UR, Bhate J 8 (1) : 18-29, 2007
Molecular Connections Pvt. Ltd., Bangalore, India
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A comparison of information on molecular interactions available in full-length publications versus abstracts.
Mahadevan U, Bhate J, Raghunath A, Kashyap S, Dey PC, Prakash N, Bhat B, Zachariah LL, Wong L, 8 (1) : 8-17, 2007
Molecular Connections Pvt. Ltd., Bangalore, India and National Institute of Singapore, Republic of Singapore
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Co-regulator recruitment and the mechanism of retinoic acid receptor synergy
Pierre Germain, Jaya Iyer, Christina Zechel, Hinrich Gronemeyer Nature 415, 187 – 192 (10 Jan 2002), Letters to Nature
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Literature Data Mining for Biology
Lynette Hirschman, Jong C. Park, Junichi Tsujii, Cathy Wu, Limsoon Wong.
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Toward Routine Automatic Pathway Discovery from On-Line Scientific Text Abstracts
S.-K. Ng, M. Wong.
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Natural Language Processing and Information Extraction in Biology
Jun-ichi Tsujii, Limsoon Wong.